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Scientific Publications
You may find here a selection of some of ViroLab recent peer-reviewed published output.

DocumentsDate added

Order by : Name | Date | Hits [ Ascendant ]
file icon Evolution of a novel 5-amino-acid insertion in the beta3-beta4 loop of HIV-1 reverse transcriptasehot!
Huigen MC, de Graaf L, Eggink D, Schuurman R, Müller V, Stamp A, Stammers DK, Boucher CA, Nijhuis M. Evolution of a novel 5-amino-acid insertion in the beta3-beta4 loop of HIV-1 reverse transcriptase. Virology. 2007 Aug 1;364(2):395-406.
file icon Evidence of long-term suppression of hepatitis B virus DNA by tenofovir as rescue treatment (...)hot!
Quiros-Roldan E, Calabresi A, Lapadula G, Tirelli V, Costarelli S, Cologni G, Zaltron S, Puoti M, Carosi G, Torti C. Evidence of long-term suppression of hepatitis B virus DNA by tenofovir as rescue treatment in patients coinfected by HIV. Antivir Ther. 2008;13(3):341-8.
file icon EuroSIDA Study Group. Modelled in vivo HIV fitness under drug selective pressure and estimated (...)hot!
Deforche K, Cozzi-Lepri A, Theys K, Clotet B, Camacho RJ, Kjaer J, Van Laethem K, Phillips A, Moreau Y, Lundgren JD, Vandamme AM; EuroSIDA Study Group. Modelled in vivo HIV fitness under drug selective pressure and estimated genetic barrier towards resistance are predictive for virological response. Antivir Ther. 2008;13(3):399-407.
file icon Estimating the relative contribution of dNTP pool imbalance and APOBEC3G/3Fhot!
Deforche K, Camacho R, Laethem KV, Shapiro B, Moreau Y, Rambaut A, Vandamme AM, Lemey P. Estimating the relative contribution of dNTP pool imbalance and APOBEC3G/3F editing to HIV evolution in vivo. J Comput Biol. 2007 Oct;14(8):1105-14.
file icon Environment for Collaborative Development and Execution of Virtual Laboratory Applicationshot!
W. Funika, D. Harezlak, D. Krol, M. Bubak. Environment for Collaborative Development and Execution of Virtual Laboratory Applications. In: Lecture Notes in Computer Science 5103 (Bubak M, van Albada D G, Dongarra J, Sloot P M A eds.), Springer-Verlag, 2008, pp. 246-458.
file icon Enhanced Decision Support for HIV Drug Resistance Interpretationhot!
Enhanced Decision Support for HIV Drug Resistance Interpretation B. Ó Nualláin; D. van de Vijver; C. Boucher; A. Tirado-Ramos and P.M.A. Sloot , in Proceedings of the 6th European HIV Drug Resistance Workshop, (in press) . Budapest, March 2008.
file icon Effect of human immunodeficiency virus type 1 protease inhibitor therapy and subtype on (...)hot!
Palma AC, Abecasis AB, Vercauteren J, Carvalho AP, Cabanas J, Vandamme AM, Camacho RJ. Effect of human immunodeficiency virus type 1 protease inhibitor therapy and subtype on development of resistance in subtypes B and G. Infect Genet Evol. 2009 Jul 2.
file icon Dynamic Interactions in HLA Component Model for Multiscale Simulationshot!
K.J. Rycerz; P.M.A. Sloot and M.T. Bubak: Dynamic Interactions in HLA Component Model for Multiscale Simulations, in M.T. Bubak; G.D. van Albada; J.J. Dongarra and P.M.A. Sloot, editors, Computational Science - ICCS 2008: 8th International Conference, Krakow, Poland, Proceedings, Part II, in series Lecture Notes in Computer Science, vol. 5102, pp. 217-226. Springer, Berlin, Heidelberg, June 2008. 978-3-540-69386-4.
file icon Dynamic Access Control Management for Distributed Biomedical Data Resourceshot!
Assel M, Kalyoncu O. Dynamic Access Control Management for Distributed Biomedical Data Resources. In: Collaboration and the Knowledge Economy: Issues, Applications, Case Studies (Cunningham P, Cunningham M eds.), IOS Press, 2008, pp. 1593-1599.
file icon Drug resistance mutations for surveillance of transmitted HIV-1 drug-resistancehot!
Bennett DE, Camacho RJ, Otelea D, Kuritzkes DR, Fleury H, Kiuchi M, Heneine W, Kantor R, Jordan MR, Schapiro JM, Vandamme AM, Sandstrom P, Boucher CA, van de Vijver D, Rhee SY, Liu TF, Pillay D, Shafer RW. Drug resistance mutations for surveillance of transmitted HIV-1 drug-resistance: 2009 update. PLoS One. 2009;4(3):e4724.
file icon Distinguishing epidemiological dependent from treatment (resistance) dependent HIV mutationshot!
Schietgat L, K Theys, J Ramon, H Blockeel, and AM Vandamme. Distinguishing epidemiological dependent from treatment (resistance) dependent HIV mutations: Problem Statement. Ecml, 2008.
file icon Discordant genotypic interpretation and phenotypic role of protease mutations in HIV-1 subtypes B...hot!
Santos AF, Abecasis AB, Vandamme AM, Camacho RJ, Soares MA. Discordant genotypic interpretation and phenotypic role of protease mutations in HIV-1 subtypes B and G. J Antimicrob Chemother. Mar;63(3):593-9.
file icon Discordances between interpretation algorithms for genotypic resistance to protease and reverse tranhot!
Snoeck J, Kantor R, Shafer RW, Van Laethem K, Deforche K, Carvalho AP, Wynhoven B, Soares MA, Cane P, Clarke J, Pillay C, Sirivichayakul S, Ariyoshi K, Holguin A, Rudich H, Rodrigues R, Bouzas MB, Brun-Vezinet F, Reid C, Cahn P, Brigido LF, Grossman Z, Soriano V, Sugiura W, Phanuphak P, Morris L, Weber J, Pillay D, Tanuri A, Harrigan RP, Camacho R, Schapiro JM, Katzenstein D, Vandamme AM. Discordances between interpretation algorithms for genotypic resistance to protease and reverse transcriptase inhibitors of human immunodeficiency virus are subtype dependent. Antimicrob Agents Chemother. 2006 Feb;50(2):694-701.
file icon Development and Execution of Collaborative Application on the ViroLab Virtual Laboratoryhot!
Development and Execution of Collaborative Application on the ViroLab Virtual Laboratory M. Kasztelnik, T. Gubala, M. Malawski, M. Bubak; in Kracow Grid Workshop 2007 Workshop Proceedings, pp.41-46, ACC CYFRONET AGH 2008
file icon Data Management and Integration within Collaborative Working Environmentshot!
Assel M, Kipp A. Data Management and Integration within Collaborative Working Environments. In: Proc. 10th International Conference on Enterprise Information Systems, Barcelona, Spain, 2008, pp. 258-263.
file icon Computational e-Science: Studying complex systems in silicohot!
P.M.A. Sloot; D. Frenkel; H.A. Van der Vorst; A. van Kampen; H.E. Bal; P. Klint; R.M.M. Mattheij; J. van Wijk; J. Schaye; H.-J. Langevelde; R.H. Bisseling; B. Smit; E. Valenteyn; H.J. Sips; J.B.T.M. Roerdink and K.G. Langedoen: Computational e-Science: Studying complex systems in silico. A National Coordinated Initiative. White Paper., . February 2007.
file icon Complex Agent Networks explaining the HIV epidemic among homosexual men in Amsterdamhot!
A.M. Shan; P.M.A. Sloot; R. Quax; Y. Zhu and W. Wang: Complex Agent Networks explaining the HIV epidemic among homosexual men in Amsterdam, Mathematics and Computers in Simulation, (submitted). 2009.
file icon Comparing the prevalence of tipranavir resistance mutations in naïve, PI experienced and (...)hot!
Pieter Libin, Stijn Imbrechts, Gertjan Beheydt, Kristof Theys, Raphael Sangeda, Kristof Theys, Ricardo Camacho, Bonaventura Clotet, Kristel Van Lae-them, Maurizio Zazzi, Anders, Sönnerborg, Rolf Kaiser, Andrea De Luca, Carlo Torti, Wensing, A.M.J., Grzegorz Stanczak, Marek Linka, Mario Poljak, Snjezana Zidovec Lepej, Eric Van Wijngaerden, Chris Verhofstede, Soo-Yon Rhee, Anne-Mieke Vandamme. Comparing the prevalence of tipranavir resistance mutations in naïve, PI experienced and ti-pranavir experienced patients, for the EHR, ViroLab, EuResist and BREACH projects. International BioInformatics Workshop on Virus Evolution and Molecular Epidemiology, 7-11 September 2009, Rotterdam, The Netherlands.
file icon Comparative Genomics in AIDS Researchhot!
Lemey P, Deforche K and Vandamme A-M. Comparative Genomics in AIDS Research. In ‘Comparative Genomics. Basic and Applied Research’, (J.R. Brown, ed.), CRC Press, Taylor & Francis Group, pp219-244, 2008.
file icon Collaborative Virtual Laboratory for e-Healthhot!
M.T. Bubak; T. Gubala; M. Kasztelnik; M. Malawski; P. Nowakowski and P.M.A. Sloot: Collaborative Virtual Laboratory for e-Health, in P. Cunningham and M. Cunningham, editors, Expanding the Knowledge Economy: Issues, Applications, Case Studies, eChallenges e-2007 Conference Proceedings, pp. 537-544. IOS Press, Amsterdam, 2007. ISBN 978-1-58603-801-4 (paper), ISBN: 978-1-905824-05-2 (CD).
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