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Scientific Publications
You may find here a selection of some of ViroLab recent peer-reviewed published output.

DocumentsDate added

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file icon Provenance Tracking and End-User Oriented Query Constructionhot!
B. Balis, M. Bubak, M. Pelczar, J. Wach. Provenance Tracking and End-User Oriented Query Construction, In: M. Cannataro (Ed.) Handbook of Research on Computational Grid Technologies for Life Sciences, Biomedicine and Healthcare, Information Science Reference, 2009, IGI Global.
file icon Provenance Querying for End-Users: A Drug Resistance Case Studyhot!
B. Balis, M. Bubak, M. Pelczar, J. Wach. Provenance Querying for End-Users: A Drug Resistance Case Study. In: Lecture Notes in Computer Science 5103 (Bubak M, van Albada D G, Dongarra J, Sloot P M A eds.), Springer-Verlag, 2008, pp. 80-89.
file icon Problem-Solving Environments for Biological Morphogenesis Computhot!
R.M.H. Merks, A.G. Hoekstra, J.A. Kaandorp, P.M.A. Sloot, P. Hogeweg. Problem-Solving Environments for Biological Morphogenesis Comput. Sci. Eng, vol. 8, nr 1 pp. 61-72. 2006.
K.J. Rycerz; M.T. Bubak; P.M.A. Sloot and V.S. Getov: Problem solving environment for distributed interactive applications, in S. Gorlatch; M.T. Bubak and T. Priol, editors, Achievements in European Research on Grid Systems - CoreGRID Integration Workshop 2006 (Selected Papers), pp. 55-66. Springer, 2008. ISBN-13 978-0-387-72811-7.
file icon Prevalence and Risk Factors for Etravirine Resistance among Patients Failing to (...)hot!
Prevalence and Risk Factors for Etravirine Resistance among Patients Failing to Non-Nucleoside Reverse Transcriptase Inhibitors. Lapadula G., Calabrese A., Castelnuovo F., Costarelli S., Quiros-Roldan E., Paraninfo G., Ceresoli F., Manca N., Carosi G., Torti C. Prevalence and Risk Factors for Etravirine Resistance among Patients Failing to Non-Nucleoside Reverse Transcriptase Inhibitors. Antiviral Therapy, in press.
file icon Predictive value of HIV-1 genotypic resistance test interpretation algorithms.hot!
Rhee SY, Fessel WJ, Liu TF, Marlowe NM, Rowland CM, Rode RA, Vandamme AM, Van Laethem K, Brun-Vezinet F, Calvez V, Taylor J, Hurley L, Horberg M, Shafer RW. Predictive value of HIV-1 genotypic resistance test interpretation algorithms. J Infect Dis. 2009 Aug 1;200(3):453-63.
file icon Plasma HIV load and proviral DNA decreases after two standard antiretroviral regimens in ...hot!
Torti C, Quiros-Roldan ME, Cologni G, Nichelatti M, Ceresoli F, Pinti M, Nasi M, Cossarizza A, Lapadula G, Costarelli S, Manca N, Gargiulo F, Magoni M, Carosi G. Plasma HIV load and proviral DNA decreases after two standard antiretroviral regimens in HIV-positive patients naïve to antiretrovirals. Curr HIV Res. 2008 Jan;6(1):43-8.
file icon Pharmacokinetic variability of antiretroviral drugs and correlation with virological outcome (...)hot!
Fabbiani M, Di Giambenedetto S, Bracciale L, Bacarelli A, Ragazzoni E, Cauda R, Navarra P, De Luca A. Pharmacokinetic variability of antiretroviral drugs and correlation with virological outcome: 2 years of experience in routine clinical practice. J Antimicrob Chemother. 2009 Jul;64(1):109-17.
file icon Optimization of Grid Application Executionhot!
Optimization of Grid Application Execution Joanna Kocot, Iwona Ryszka; Master of Science Thesis supervised by Marian Bubak; AGH University of Science and Technology, June 2007, Krakow, Poland
file icon Optimization of Application Execution in the ViroLab Virtual Laboratoryhot!
Optimization of Application Execution in the ViroLab Virtual Laboratory Maciej Malawski, Joanna Kocot, Eryk Ciepiela, Marian Bubak; in Kracow Grid Workshop 2007 Workshop Proceedings, pp.65-70, ACC CYFRONET AGH 2008
file icon No response to first-line tenofovir+lamivudine+efavirenz despite optimization according to baseline hot!
Van Laethem K, De Munter P, Schrooten Y, Verbesselt R, Van Ranst M, Van Wijngaerden E, Vandamme AM. No response to first-line tenofovir+lamivudine+efavirenz despite optimization according to baseline resistance testing: impact of resistant minority variants on efficacy of low genetic barrier drugs. J Clin Virol. 2007 May;39(1):43-7.
file icon No evidence of relation between peripheral neuropathy and presence of hemochromatosis gene(...)hot!
Costarelli S, Torti C, Gatta LB, Tinelli C, Lapadula G, Quiros-Roldan E, Izzo I, Castelnuovo F, Biasiotto G, Arosio P, Carosi G. No evidence of relation between peripheral neuropathy and presence of hemochromatosis gene mutations in HIV-1-positive patients. J Acquir Immune Defic Syndr. 2007 Oct 1;46(2):255-6.
file icon Multi-Science Decision Support for HIV Drug Resistance Treatmenthot!
Global Healthgrid: e-Science Meets Biomedical Informatics. Peter Sloot, Peter Cobeney, Marian T. Bubak, Anne-Mieke Vandame, Breanndán Ó Nualláin, David van de Vijver and Charles Boucher. Proceedings of HealthGrid 2008. IOS press ISBN 978-I-58603-874-8. Pages 188 - 198, 2008. Editors T. Solomonides et al.
file icon Monitoring of Component-Based Applicationshot!
Monitoring of Component-Based Applications Eryk Ciepiela; Master of Science Thesis supervised by Marian Bubak; AGH University of Science and Technology, June 2007, Krakow, Poland
file icon Monitoring infrastructure for Grid scientific workflowshot!
B. Balis, M. Bubak. Monitoring infrastructure for Grid scientific workflows in 3rd Workshop on Workflows in Support of Large-Scale Science during SuperComputing 08 The International Conference for High Performance Computing, Networking, Storage and Analysis, November 2008 Austin, Texas, IEEE 2008.
file icon Modeling of Complex Systems by Cellular Automatahot!
J. Kroc and P.M.A. Sloot: Modeling of Complex Systems by Cellular Automata, in J.R. Rabuñal; J. Dorado and A. Pazos, editors, Encyclopedia of Artificial Intelligence, . Information Science Reference, May 2008. ISBN: 978-1-59904-849-9.
file icon Meta-Model and Framework for Application-Level Interaction Protocolshot!
Eryk Ciepiela, Maciej Malawski and Marian Bubak. Meta-Model and Framework for Application-Level Interaction Protocols, 2nd International Workshop on Real Time Online Interactive Applications on the Grid (ROIA 2009) in conjunction with Euro-Par 2009, to be published in Lecture Notes in Computer Science, Springer, 2009.
file icon Invocation of operations from script-based grid applicationshot!
M. Malawski, T. Bartynski, and M. Bubak, \"Invocation of operations from script-based grid applications,\" Future Generation Computer Systems, vol. In Press, Accepted Manuscript, 2009.
file icon Invocation of Grid Operations in the ViroLab Virtual Laboratoryhot!
Invocation of Grid Operations in the ViroLab Virtual Laboratory Tomasz Bartyski, Maciej Malawski, Marian Bubak; in Kracow Grid Workshop 2007 Workshop Proceedings, pp.59-64, ACC CYFRONET AGH 2008
file icon Investigation of expert rule bases, logistic regression, and non-linear machine learning (...)hot!
Prosperi MC, Altmann A, Rosen-Zvi M, Aharoni E, Borgulya G, Bazso F, Sànnerborg A, Schülter E, Struck D, Ulivi G, Vandamme AM, Vercauteren J, Zazzi M; EuResist and Virolab study groups. Investigation of expert rule bases, logistic regression, and non-linear machine learning techniques for predicting response to antiretroviral treatment. Antivir Ther. 2009;14(3):433-42.
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