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Scientific Publications
You may find here a selection of some of ViroLab recent peer-reviewed published output.

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file icon Circulating HIV Type 1 Drug Resistance Will Have Limited Impact on the Effectiveness of Preexposure hot!
Van de Vijver DAMC, Derdelinckx I, Boucher CAB, Circulating HIV-1 drug resistance will have limited impact on the effectiveness of Pre-Exposure Prophylaxis among young women in Zimbabwe. J Infect Dis 2009; 199: 1310-1317
file icon Characterization of JC virus in cerebrospinal fluid from HIV-1 infected patients with progressive...hot!
Marzocchetti A, Sanguinetti M, Giambenedetto SD, Cingolani A, Fadda G, Cauda R, De Luca A. Characterization of JC virus in cerebrospinal fluid from HIV-1 infected patients with progressive multifocal leukoencephalopathy: insights into viral pathogenesis and disease prognosis. J Neurovirol. 2007 Aug;13(4):338-46.
file icon Bioinformatics tools for the investigation of emerging and re-emerging infectious diseaseshot!
Vandamme AM. Bioinformatics tools for the investigation of emerging and re-emerging infectious diseases. Introduction. Infect Genet Evol. 2009 Jul;9(4):671.
file icon Bayesian network analysis of resistance pathways against HIV-1 protease inhibitorshot!
Deforche K, Camacho R, Grossman Z, Silander T, Soares MA, Moreau Y, Shafer RW, Van Laethem K, Carvalho AP, Wynhoven B, Cane P, Snoeck J, Clarke J, Sirivichayakul S, Ariyoshi K, Holguin A, Rudich H, Rodrigues R, Bouzas MB, Cahn P, Brigido LF, Soriano V, Sugiura W, Phanuphak P, Morris L, Weber J, Pillay D, Tanuri A, Harrigan PR, Shapiro JM, Katzenstein DA, Kantor R, Vandamme AM. Bayesian network analysis of resistance pathways against HIV-1 protease inhibitors. Infect Genet Evol. 2007 Jun;7(3):382-90.
file icon Bayesian network analyses of resistance pathways against efavirenz and nevirapinehot!
Deforche K, Camacho RJ, Grossman Z, Soares MA, Van Laethem K, Katzenstein DA, Harrigan PR, Kantor R, Shafer R, Vandamme AM; non-B Workgroup. Bayesian network analyses of resistance pathways against efavirenz and nevirapine. AIDS. 2008 Oct 18;22(16):2107-15.
file icon Association of HIV-1 replication capacity with treatment outcomes in patients with virologic treatmehot!
De Luca A, Weidler J, Di Giambendetto S, Coakley E, Cingolani A, Bates M, Lie Y, Pesano R, Cauda R, Schapiro J. Association of HIV-1 replication capacity with treatment outcomes in patients with virologic treatment failure. Journal of Acquired Immune Deficiency Syndrome 2007 Aug 1; 45(4):411-7.
file icon Assessment of automated genotyping protocols as tools for surveillance of HIV-1 genetic diversityhot!
Gifford R, de Oliveira T, Rambaut A, Myers RE, Gale CV, Dunn D, Shafer R, Vandamme AM, Kellam P, Pillay D; UK Collaborative Group on HIV Drug Resistance. Assessment of automated genotyping protocols as tools for surveillance of HIV-1 genetic diversity. AIDS. 2006 Jul 13;20(11):1521-9.
file icon Are mutations in HIV type-1 reverse transcriptase 245 codon predictive of abacavir (...)hot!
Bracciale L, Santangelo R, Fanti I, Prosperi M, Colafigli M, Di Giambenedetto S, Marchetti S, Di Franco A, Cauda R, De Luca A. Are mutations in HIV type-1 reverse transcriptase 245 codon predictive of abacavir hypersensitivity reaction? Antivir Ther. 2009;14(1):99-101.
file icon Approaching Fine-grain Access Control for Distributed Biomedical Databases within Virtual (...)hot!
Assel M, Kalyoncu O, Pan Y. Approaching Fine-grain Access Control for Distributed Biomedical Databases within Virtual Environments. In: Proc. 8th Cracow Grid Workshop, Kraków, Poland, 2009, pp. 311-319.
file icon Application of parallel computing to stochastic parameter estimation in environmental models Computehot!
J.A. Vrugt, B.O. Nualláin, B.A. Robinson, W. Bouten, S.C. Dekker, P.M.A. Sloot. Application of parallel computing to stochastic parameter estimation in environmental models Computers & Geosciences, vol. 32, nr 8 pp. 1139-1155. 2006.
file icon Antiretroviral resistance in different HIV-1 subtypeshot!
Camacho RJ, Vandamme AM. Antiretroviral resistance in different HIV-1 subtypes: impact on therapy outcomes and resistance testing interpretation. Curr Opin HIV AIDS. 2007 Mar;2(2):123-9.
file icon Analysis of HIV-1 pol sequences using Bayesian networks: implications for drug resistancehot!
Deforche K, Silander T, Camacho R, Grossman Z, Soares M, Van Laethem K, Kantor R, Moreau Y, Vandamme AM., non-B workgroup. Analysis of HIV-1 pol sequences using Bayesian networks: implications for drug resistance. Bioinformatics 2006 Dec 15;22(24):2975-9. Epub. 2006 Oct 4.
file icon An ontology model for execution records of Grid scientific applicationshot!
B. Balis, M. Bubak. An ontology model for execution records of Grid scientific applications in 4th International Conference on Semantics, Knowledge and Grid SKG 2008, December 2008, Beijing, China, pp. 34-41, IEEE 2008.
file icon An Event-Based Approach to Reducing Coupling in Large-Scale Applicationshot!
B. Kowalewski, M. Bubak, B. Balis. An Event-Based Approach to Reducing Coupling in Large-Scale Applications. In: Lecture Notes in Computer Science 5103 (Bubak M, van Albada D G, Dongarra J, Sloot P M A eds.), Springer-Verlag, 2008, pp. 358-367.
file icon Algorithms for the interpretation of HIV-1 genotypic drug resistance informationhot!
Vercauteren J, Vandamme AM. Algorithms for the interpretation of HIV-1 genotypic drug resistance information. Antiviral Res. 2006 Sep;71(2-3):335-42.
file icon African descent is associated with slower CD4 cell count decline in treatment-naive patients of(...)hot!
Müller V, von Wyl V, Yerly S, Böni J, Klimkait T, Bürgisser P, Ledergerber B, Günthard HF, Bonhoeffer S; Swiss HIV Cohort Study. African descent is associated with slower CD4 cell count decline in treatment-naive patients of the Swiss HIV Cohort Study. AIDS. 2009 Jun 19;23(10):1269-76.
file icon A Tool for Building Collaborative Applications by Invocation of Grid Operationshot!
M. Malawski, T. Bartynski, M. Bubak. A Tool for Building Collaborative Applications by Invocation of Grid Operations. In: Lecture Notes in Computer Science 5103 (Bubak M, van Albada D G, Dongarra J, Sloot P M A eds.), Springer-Verlag, 2008, pp. 243-252.
file icon A standardized framework for accurate, high-throughput genotyping of recombinant and (...)hot!
Alcantara LC, Cassol S, Libin P, Deforche K, Pybus OG, Van Ranst M, Galvão-Castro B, Vandamme AM, de Oliveira T. A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences. Nucleic Acids Res. 2009 Jul 1;37(Web Server issue):W634-42.
file icon A Security Framework for Dynamic Collaborative Working Environmentshot!
Assel M, Wesner S, Kipp A. A Security Framework for Dynamic Collaborative Working Environments. Identity in the Information Society, 2009 (accepted for publication).
file icon A king in the CASTLE?hot!
Torti C, Frank I. A king in the CASTLE? Optimum initial HIV protease inhibitor. Lancet. 2008 Aug 23;372(9639):604-6.
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