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Scientific Publications
You may find here a selection of some of ViroLab recent peer-reviewed published output.

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file icon The rise and fall of K65R in a Portuguese HIV-1 Drug Resistance database, despite continuously (...)hot!
Theys K., J. Vercauteren, A Abecasis, P. Libin, K. Deforche, AM Vandamme and R. Camacho. The rise and fall of K65R in a Portuguese HIV-1 Drug Resistance database, despite continuously increasing use of Tenofovir. Infection, Genetics and Evolution 2009 Jul;9(4):683-8.
file icon Tracing the HIV-1 subtype B mobility in Europe: a phylogeographic approachhot!
Paraskevis D, Pybus O, Magiorkinis G, Hatzakis A, Wensing AM, van de Vijver DA, Albert J, Angarano G, Asjö B, Balotta C, Boeri E, Camacho R, Chaix ML, Coughlan S, Costagliola D, De Luca A, de Mendoza C, Derdelinckx I, Grossman Z, Hamouda O, Hoepelman I, Horban A, Korn K, Kücherer C, Leitner T, Loveday C, Macrae E, Maljkovic-Berry I, Meyer L, Nielsen C, Op de Coul EL, Ormaasen V, Perrin L, Puchhammer-Stöckl E, Ruiz L, Salminen MO, Schmit JC, Schuurman R, Soriano V, Stanczak J, Stanojevic M, Struck D, Van Laethem K, Violin M, Yerly S, Zazzi M, Boucher CA, Vandamme AM; SPREAD Programme. Tracing the HIV-1 subtype B mobility in Europe: a phylogeographic approach. Retrovirology. 2009 May 20;6:49.
file icon Algorithms for the interpretation of HIV-1 genotypic drug resistance informationhot!
Vercauteren J, Vandamme AM. Algorithms for the interpretation of HIV-1 genotypic drug resistance information. Antiviral Res. 2006 Sep;71(2-3):335-42.
file icon Towards Context-Sensitive Data Access For Distributed Data Resources within Collaborative(...)hot!
Assel M, Jiang T. Towards Context-Sensitive Data Access For Distributed Data Resources within Collaborative Working Environments. eChallenges Conference 2009, Istanbul, Turkey, 2009 (in press).
file icon Towards semantic-based monitoring of ProActive.hot!
Wlodzimierz Funika, Dennis Caromel, Pawel Koperek and M. Kupisz. Towards semantic-based monitoring of ProActive. Accepted for CoreGRID 2009 Workshop in conjunction with EuroPar 2009, August 24, 2009, Delft, Netherlands.
file icon Simulating Individual-Based Models of Epidemics in Hierarchical Networkshot!
R. Quax; D.A. Bader and P.M.A. Sloot: Simulating Individual-Based Models of Epidemics in Hierarchical Networks, in G. Allen; J. Nabrzyski; E. Seidel; G.D. van Albada; J.J. Dongarra and P.M.A. Sloot, editors, Computational Science - ICCS 2009: 9th International Conference, Baton Rouge, LA, USA, Proceedings, Part I, in series Lecture Notes in Computer Science, vol. 5544, pp. 725-734. Springer, Berlin, Heidelberg, May 2009.
file icon Effect of human immunodeficiency virus type 1 protease inhibitor therapy and subtype on (...)hot!
Palma AC, Abecasis AB, Vercauteren J, Carvalho AP, Cabanas J, Vandamme AM, Camacho RJ. Effect of human immunodeficiency virus type 1 protease inhibitor therapy and subtype on development of resistance in subtypes B and G. Infect Genet Evol. 2009 Jul 2.
file icon The convenience of flow cytometry for HLA-B*5701 screening to prevent abacavir hypersensitivity(...)hot!
Airo P, Scarsi M, Malagoli A, Carella G, Izzo I, Carosi G, Torti C. The convenience of flow cytometry for HLA-B*5701 screening to prevent abacavir hypersensitivity reactions. J Acquir Immune Defic Syndr. 2009 Jul 1;51(3):361-2.
file icon A standardized framework for accurate, high-throughput genotyping of recombinant and (...)hot!
Alcantara LC, Cassol S, Libin P, Deforche K, Pybus OG, Van Ranst M, Galvão-Castro B, Vandamme AM, de Oliveira T. A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences. Nucleic Acids Res. 2009 Jul 1;37(Web Server issue):W634-42.
file icon Bioinformatics tools for the investigation of emerging and re-emerging infectious diseaseshot!
Vandamme AM. Bioinformatics tools for the investigation of emerging and re-emerging infectious diseases. Introduction. Infect Genet Evol. 2009 Jul;9(4):671.
file icon Pharmacokinetic variability of antiretroviral drugs and correlation with virological outcome (...)hot!
Fabbiani M, Di Giambenedetto S, Bracciale L, Bacarelli A, Ragazzoni E, Cauda R, Navarra P, De Luca A. Pharmacokinetic variability of antiretroviral drugs and correlation with virological outcome: 2 years of experience in routine clinical practice. J Antimicrob Chemother. 2009 Jul;64(1):109-17.
file icon Therapy-selected mutations at RT position 215 counteract selection of K65R in HIV-2-infected patienthot!
JC Silva, AC Miranda, MF Gonçalves, E Valadas, K Mansinho, K Van Laethem, A-M Vandamme, P Gomes and RJ Camacho on behalf of the Portuguese HIV-2 Study Group. Therapy-selected mutations at RT position 215 counteract selection of K65R in HIV-2-infected patients. Presented at the International Drug Resistance Workshop, abstract 88, 9-13 June 2009, Fort Meyers, USA. Antiviral Therapy 2009; 14 Suppl 1:A105.
file icon Meta-Model and Framework for Application-Level Interaction Protocolshot!
Eryk Ciepiela, Maciej Malawski and Marian Bubak. Meta-Model and Framework for Application-Level Interaction Protocols, 2nd International Workshop on Real Time Online Interactive Applications on the Grid (ROIA 2009) in conjunction with Euro-Par 2009, to be published in Lecture Notes in Computer Science, Springer, 2009.
file icon Circulating HIV Type 1 Drug Resistance Will Have Limited Impact on the Effectiveness of Preexposure hot!
Van de Vijver DAMC, Derdelinckx I, Boucher CAB, Circulating HIV-1 drug resistance will have limited impact on the effectiveness of Pre-Exposure Prophylaxis among young women in Zimbabwe. J Infect Dis 2009; 199: 1310-1317
file icon Computational e-Science: Studying complex systems in silicohot!
P.M.A. Sloot; D. Frenkel; H.A. Van der Vorst; A. van Kampen; H.E. Bal; P. Klint; R.M.M. Mattheij; J. van Wijk; J. Schaye; H.-J. Langevelde; R.H. Bisseling; B. Smit; E. Valenteyn; H.J. Sips; J.B.T.M. Roerdink and K.G. Langedoen: Computational e-Science: Studying complex systems in silico. A National Coordinated Initiative. White Paper., . February 2007.
file icon Quality of Service on the Grid with User Level Schedulinghot!
J. Mos\'cicki; M.T. Bubak; H.C. Lee; A. Muraru and P.M.A. Sloot: Quality of Service on the Grid with User Level Scheduling, in M.T. Bubak; M.Turala and K. Wiatr, editors, CGW\'06 Proceedings, pp. 119-129. Cracow, Poland, July 2007. ISBN 83-915141-7-X.
file icon A complex automata model of HIV-1 co-receptor tropism: Understanding mutation rate pressurehot!
G. Ertaylan and P.M.A. Sloot: A complex automata model of HIV-1 co-receptor tropism: Understanding mutation rate pressure, in Reviews in Antiretroviral Therapy, . Washington D.C., USA, December 2007.
file icon in Distributed, High-Performance and Grid Computing in Computational Biologyhot!
W. Dubizky; A Schuster; P.M.A. Sloot; M. Schroeder and M. Romberg: in Distributed, High-Performance and Grid Computing in Computational Biology, (Sublibrary: Lecture Notes in Bioinformatics) in series Lecture Notes in Computer Science, vol. 4360, pp. 1-190. Springer, Berlin, Heidelberg, January 2007. ISSN 0302-9743; ISBN-10 3-540-69841-8.
file icon Collaborative Virtual Laboratory for e-Healthhot!
M.T. Bubak; T. Gubala; M. Kasztelnik; M. Malawski; P. Nowakowski and P.M.A. Sloot: Collaborative Virtual Laboratory for e-Health, in P. Cunningham and M. Cunningham, editors, Expanding the Knowledge Economy: Issues, Applications, Case Studies, eChallenges e-2007 Conference Proceedings, pp. 537-544. IOS Press, Amsterdam, 2007. ISBN 978-1-58603-801-4 (paper), ISBN: 978-1-905824-05-2 (CD).
file icon Grid-based Interactive Decision Support in BioMedicinehot!
A. Tirado-Ramos; P.M.A. Sloot and M.T. Bubak: Grid-based Interactive Decision Support in BioMedicine, in T. El-Ghazali and A.Y. Zomaya, editors, Grids for Bioinformatics and Computational Biology, pp. 225-246. John Wiley and Sons, USA, January 2008.
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